Can Forms Have Multiple Sections and Conditional Navigation?

As an example, if I my customer has configuration 'A', I will want them to fill out a certain section of the overall form (survey).  If configuration'B', they will fill out a different section.  Does JotForm support this?

Yes, this is possible. You can use Jotform's show and hide condition feature https://www.jotform.com/help/316-How-to-Show-or-Hide-Fields-Base-on-User-s-Answer.

Alongside with the condition, you can use form collapse to show and hide fields based on user selection https://www.jotform.com/help/297-Show-or-Hide-Multiple-Fields-at-Once-Using-the-Section-Collapse-Field.

I hope this helps. Let us know if you have any questions or if you need further assistance.