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When you create the PDF version of your form it will not look identical to the form that is displayed on your website. The PDF version will closely resemble the format you would get when you download your submissions in the PDF file format.
Base on my checks, the PDF version of the form can not be filled - it is static. So it will not be interactive like the form in your browser. Is this the issue you are having? Maybe you have show/hide conditions that are not being triggered when an input is made. Please advise.