Eliminate submission document?

When submitting a document through ftp, both the attachment and a submission file are sent.  Can the submission file not be sent or can it be sent to a different folder than the attachment?

I believe you're looking to disable the uploaded file attachment from your form when a new submission is sent to you with the email notification.

Please refer to https://www.jotform.com/help/393-How-to-Attach-a-File-to-Autoresponder-Emails and you can then do the opposite to disable it for your email or autoresponder.