Can I use different banks and bank account numbers in each of my forms.

Can I use different banks and bank account numbers in each of my forms. Example: Clover Kids Camp jotform funds from stripe to be deposited into Iowa State Bank Checking account #000-00-11 and then Pint Size Kids Camp jobform funds be deposited into Prairie State Bank Checking acct #000-00-22?

As long as you have different Stripe accounts, yes, each form can be integrated with a different account.  Forms are limited to a single payment processor per form, but each form can have a different payment processor or account.